TreeView!

TreeView alternatives

  • Archaeopteryx

  • Archaeopteryx is a software tool for the visualization, analysis, and editing of potentially large and highly annotated phylogenetic trees. Archaeopteryx (the successor to ATV) is entirely written in the Java programming language (it is based on the forester libraries).

    tags: biology sequence phylogeny
  • FigTree

  • FigTree is designed as a graphical viewer of phylogenetic trees and as a program for producing publication-ready figures. As with most of my programs, it was written for my own needs so may not be as polished and feature-complete as a commercial program. In particular it is designed to display summarized and annotated trees produced by BEAST.

    tags: biology tree phylogeny
  • TreeView X

  • TreeView X is an open source program to display phylogenetic trees on Linux, Unix, Mac OS X, and Windows platforms. It can read and display NEXUS and Newick format tree files (such as those output by PAUP*, Clustal X, TREE-PUZZLE, and other programs). It has a subset of the functionality of the version of TreeView available for the Mac Classic and Windows (it is roughly equivalent to version 0.95 of TreeView).

    tags: biology tree sequence phylogeny
  • UGENE

  • UGENE is a free open-source cross-platform bioinformatics software

    tags: sciences dna structure bioinformatics sequence-alignment
  • Dendroscope

  • Researchers studying phylogenetic relationships need software that is able to visualize rooted phylogenetic trees and networks efficiently, increasingly of large datasets involving hundreds of thousands of taxa. The program should be user friendly (easy to run on all popular operating systems), facilitate interactive browsing and editing the trees and allow one to export the result in multiple file formats in publication quality. In addition, there is a need for a program that allows one to compute rooted phylogenetic networks from trees. ยป

    tags: biology tree phylogeny
  • MacVector

  • MacVector is a comprehensive Macintosh application that provides sequence editing, primer design, cloning and designing constructs, internet database searching, protein analysis, sequence confirmation, multiple sequence alignment, phylogenetic reconstruction, coding region analysis, and a variety of other functions.

    tags: sequence-alignment primer-design protein-analysis