SnapGene Viewer!

ApE is a science application for plasmid editing.

A free and open source GUI toolkit for DNA editing - written in python

Benchling is a life science data management and collaboration platform.

Geneious combines all the major DNA and protein sequence analysis tools into one revolutionary software solution!

UGENE is a free open-source cross-platform bioinformatics software

Serial Cloner has been developed to provide a light yet powerful molecular biology software to both Macintosh and Windows users. A Linux version is also distributed. Serial Cloner reads and write DNA Strider-compatible files and import and export files in the universal FASTA format. Serial Cloner also import files saved in the Vector NTI, MacVector, ApE, DNAstar, pDRAW32 and GenBank formats. Import from VectorNTI multi-file format is also supported. Powerful graphical display tools and simple interfaces help the analysis and construction steps in a very intuitive way. Serial Cloner 2.5, handles Annotations and Features both in the sequence and in the Graphic Map and can automatically scan for sequence Features. »

Vector NTI is a bioinformatics software package. The current versions are v11.5.1 for Windows/PCs and v7.1 for Macs, but only supporting Mac OS X v10.3 (Panther).Features create, annotate, analyse, and share DNA/protein sequences perform and save BLAST searches design primers for PCR, cloning, sequencing or hybridisation experiments plan cloning and run gels in silico align multiple protein or DNA sequences search NCBI’s Entrez, view, and save DNAs, proteins, and citations edit chromatogram data, assemble into contigsSee also Bioinformatics Vector (molecular biology), Vector DNA, Cloning vector, Expression vector Restriction map Computational biology List of open source bioinformatics software »

Ridom TraceEdit is a cross-platform graphical DNA trace viewer and editor. TraceEdit displays the chromatogram files from Applied Biosystems automated sequencers and files in the Staden SCF format. Incorrect base calls can be edited and saved. TraceEdit is freely available and designed to operate on Windows and UNIX platforms.DNA sequencing has been the standard against which other types of DNA testing is compared. Major advances in DNA sequencing include the development of automated sequencers, discovery of fluorescent terminator chemistry, and cycle sequencing. These developments have made sequencing easier to perform and therefore more widely used. Currently, sequencing is used to identify microbial drug resistance mutations, cancer predisposition, somatic mutations, and genetic diseases. With the sequencing of the human genome and new era of molecular , one can only expect the use of DNA sequencing to increase. Therefore, an increasing number of people need to check the evidence for individual DNA sequences by inspecting the chromatograms (more commonly known as trace files) from which the base calls were deduced. Trace files are stored in proprietary formats, such as those of ABI, or public formats such as SCF. »

Two software applications are available from Technelysium: Chromas and ChromasPro.

Genome Compiler is an easy to use genetic design platform allowing researchers to manipulate and design everything from single genes to entire genomes.

BioEdit is a biological sequence alignment editor written for Windows 95/98/NT/2000/XP/7. An intuitive multiple document interface with convenient features makes alignment and manipulation of sequences relatively easy on your desktop computer. Several sequence manipulation and analysis options and links to external analysis programs facilitate a working environment which allows you to view and manipulate sequences with simple point-and-click operations.

The DNASTAR Lasergene package is the most robust of our software offerings, and includes all of the applications from our genomics, structural biology, molecular biology, and cloning suites.

DNADynamo - for Windows, OSX and Linux. Download it now for abi/scf trace alignments, sub cloning and plasmid management, blast/sequence retrieval, sequence annotation and structure viewing - all in one integrated and easy to use bioinformatics program.

VectorFriends combines various types of cloning simulations, sequence analysis and data management into one application.